Using polarizable POSSIM force field and fuzzy-border continuum solvent model to calculate pKashifts of protein residues
نویسندگان
چکیده
منابع مشابه
POSSIM: Parameterizing Complete Second-Order Polarizable Force Field for Proteins
Previously, we reported development of a fast polarizable force field and software named POSSIM (POlarizable Simulations with Second order Interaction Model). The second-order approximation permits the speed up of the polarizable component of the calculations by ca. an order of magnitude. We have now expanded the POSSIM framework to include a complete polarizable force field for proteins. Most ...
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Polarizable force field has been successfully used in molecular modeling for years, especially in biological and protein simulations. In this research thesis, development of a new polarizable force field ―POSSIM (POlarizable Simulations with Second order Interaction Model) involving electrostatic polarization is described and parameters for several protein residues were produced. In this resear...
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ژورنال
عنوان ژورنال: Journal of Computational Chemistry
سال: 2016
ISSN: 0192-8651
DOI: 10.1002/jcc.24519